Molecular Modeling Software For Mac

Molecular Modeling Software For Mac Average ratng: 3,7/5 4352 reviews

Public Domain Software for Molecular Modeling

Molecular Modeling Program


RasMol is a molecular graphics program developed at the University of Edinburgh. The software is intended for the visualization of proteins, nucleic acids and small molecules. The program has the ability to read in PDB as well as several other formats. For more information on RasMol visit the RasMol Home Page. To connect to the RasMol ftp site click here

Molecular Modeling, free molecular modeling software downloads. Pteros is the C library for custom molecular modeling and simulations codes designed for researchers, not for C gurus. Provides facilities for PDB, XTC and TRR files IO, powerful selections, geometry transformations, RMSD.

Runs on Mac OS X 10.10 or later. To start Chimera on 10.15 (Catalina) or later, you need to right-click (or alt-click) on the app icon and choose 'Open' from the popup menu. QM/MM calculations can be used. Includes the HyperChem GUI which provides visualizing, molecule building (poly peptide (protein), nucleic acid, poly saccaride, polymer builders), calculation setup, job launch and monitoring, project-level organizing of results, access to a suite of other modelling programs. CrystalMaker Software Ltd: crystal and molecular structures, modelling, visualisation software plus diffraction pattern simulation for Mac OS X and Windows HOME SOFTWARE. Swiss PDB viewer. A 3D graphics and molecular modeling program for the simultaneous analysis of multiple models and for model-building into electron density maps. The software is available for Mac (OSX or PPC), Windows, Linux, or SGI.


ArgusLab contains: An interactive 3D molecule builder that allows the user to build and manipulate complex structures; and, a rich suite of computational methods, both quantum mechanical and molecular mechanical, for calculating ground and excited states properties.


Mage requires the use of Kinemage files. There are presently available a large number of these files for both education and research purposes (e.g., see the files at Protein Science. )

  • For the ftp site to obtain the PC versionclick here
  • For the ftp site to obtain the Mac versionclick here .
  • For the ftp site to obtain the Unix versionclick here


XMol is an excellent tool for viewing PDB files. For a complete guide to XMol (X11 display server) click here



WebLab is the newest of the public domain software for PC's and Mac computers. Unlike the present version of RasWin, WebLab will also let the user measure distances and angles, and change color according to atom type. For more information click here

VMD (Visual Molecular Dynamics)

VMD is a molecular graphics program designed for ease of use, modifiability,and modularity. It runs on Silicon Graphics workstations and may be compiled for HP-UX workstations if the NPGL library is available. Full source code and binaries for SGI's running IRIX 5.X are included in the distribution. VMD is made available via anonymous ftp free of charge by the TheoreticalBiophysics Group, located in the Beckman Institute of the University of Illinois at Urbana-Champaign. For more information click here.

More Free Software listings --Free Molecular Modeling Software

Molecular Models to Complement your Software (excellent for Classroom Use)

Indigo Instruments

MathMol Home Page

  • The MolecularModeling Templates, MMT is a C++ class library for molecular simulation applications. MMT serves as a code basis that can be easily extended and modified to perform Monte Carlo and molecular dynamics simulations.

    • Molecular Modeling Templates
    • Masakatsu Ito
    • Freeware (Free)
    • Windows
  • Facio is an OpenGL-based 3D-graphics program for molecularmodeling and visualization of quantum chemical calculations (GAMESS and Gaussian). SSH / SFTP client is also implemented. Through SSH / SFTP connection, Gaussian job can be submitted to. ..

    • Masahiko Suenaga
    • Freeware (Free)
    • 15.7 Mb
    • WinXP, Windows Vista, Windows 7
  • Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecularmodeling, bioinformatics, materials science and related areas.

    • Avogadro-1.0.3-win32.exe
    • dcurtis3
    • Freeware (Free)
    • 9.51 Mb
    • Win All
  • BALLView is our standalone molecularmodeling and visualization application. Furthermore it is also a framework for developing molecular visualization functionality. It is available free of charge under the GPL for Linux, Windows and MacOS. It. ..

    Step 4:Log in to the app with your email address and the password you created when you ordered the event. No problem – you can still watch the event online using your PC, Mac, smartphone or tablet.Just order using the link above, and follow the instructions in the confirmation email to watch the event.Before you order, check below to see if Sky Sports Box Office events are available on your device, and how to watch. Step 3:Select Add app. Once the app's downloaded, you can find it by selecting My apps on your home screen. Sky sports box office stream.

    • BALLView-Ray-pre-alpha-1.exe
    • Andreas Moll
    • Freeware (Free)
    • 38 Mb
    • WinXP, Windows Vista, Windows 7, Windows 7 x64
  • BALLView is our standalone molecular modeling and visualization application. Furthermore it is also a framework for developing molecular visualization functionality. It is available free of charge under the GPL for Linux, Windows and MacOS.

    • BALLView-1.4.0-win32-setup.exe
    • Andreas Moll, OliverKohlbacher, AndreasHildebrandt, Hans-P
    • Shareware ($)
    • 37.99 Mb
    • WinXP, Win2000, Win Vista, Windows 7, Windows 8
  • A new molecularmodeling package, offering unique and efficient tools for modeling polymeric properties of ordered and disordered proteins and other macromolecules. Includes the ABSINTH force field and implicit solvent. ..

    • campari
    • Freeware (Free)
    • 12.01 Mb
    • N/A
  • The Biomolecule Toolkit is a library for modeling biological macromolecules such as proteins, DNA and RNA. It provides a C++ interface for common tasks in structural biology to facilitate the development of molecularmodeling, design and analysis. ..

    • Biomolecule Toolkit
    • btk
    • Freeware (Free)
    • 443 Kb
    • Mac; Linux
  • A Java based molecularmodeling program. Has support for generating movies by interpolating between given positions, interactive display and manipulation of atoms and bonds, and dynamic modeling of substance. ..

    • molmaster
    • Freeware (Free)
    • 1.4 Mb
    • Windows; Mac; Linux
  • Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecularmodeling, chemistry, biochemistry, or related. ..

    • openbabel-2.3.1.tar.gz
    • openbabel
    • Freeware (Free)
    • 19.21 Mb
    • Windows; BSD; Mac; Linux
  • Pteros is the C++ library for custom molecularmodeling and simulations codes designed for researchers, not for C++ gurus. Provides facilities for PDB, XTC and TRR files IO, powerful selections, geometry transformations, RMSD fitting and alignment,. ..

    • pteros
    • Freeware (Free)
    • 1.02 Mb
    • N/A
  • The Molecular Object Library, MOL is a c#-based object-oriented component for chemoinformatics and molecular modeling.

    It does not require much learning curve and you can export files to PNG and JPEG formats. You can simply drag and drop contents and images to create your flowcharts and connect.It’s easy to use interface allows you to draw your flowcharts effortlessly with its desktop and web versions. Process flow chart software mac. Limited sharing, export to PNG format only); plans start from $4.08 per monthWorks with: Windows and Mac OS platforms only.Go To Website: Lovely ChartsMake your diagrams look professional with this application, Lovely Charts that helps you to create all kinds of diagrams that includes flowcharts, basic symbols, site map, wire frames, BPMN general and more. The tool comes with a wonderful interface which can be accessed once you have a free account. The features offered by Cacoo are pretty simple that can be comprehended easily by one and all and hence, lets you create some great flowcharts in no time.While it enables you to work in collaboration with your team, online, you can also share your flowcharts with friends and colleagues online.Price: Free (up to 25 sheets.

    • MOL
    • Yongkee Cho
    • Freeware (Free)
    • Windows
  • almost - all atom molecular simulation toolkit - is a fast and flexible molecularmodeling environment that provides powerful and efficient algorithms for molecular simulation, homology modeling, de novo design and ab-initio calculations.

    • almost
    • Freeware (Free)
    • Windows

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Molecular Modeling App

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